1- General info
GeneCodis is a web-based tool for the functional analysis of lists of genes, proteins, and regulatory elements miRNAs, transcription factors, and CpGs. It can be used to determine biological annotations or combinations of annotations that are significantly associated to a list of genes under study with respect to a reference list. As well as single collections, this tool allows users to simultaneously evaluate annotations from different sources, for example GO Biological Process and KEGG. To this end, and before computing p-values, it uses the apriori algorithm to extract sets of annotations that frequently co-occur in the analyzed list of genes. More information can be found in Carmona-Saez et al. (BMC Bioinformatics, 2006).
You are visiting a whole new website of GeneCodis. This new version, the fourth, allows users to input genes, proteins, transcription factors and also accepts CpG sites and miRNAs. We have updated the annotations and organisms. Some of them are completly new, but some old ones have not been included. Annotations are now divided in three general collections, Regulatory, Functional and Perturbation. The results are also displayed differently, we are now using D3.js. In case that you are missing any functionality, organisms, annotation or even if you want some kind of new feature please do not hesitate in contact us at bioinfo@genyo.es since we are continually working on creating a complete updated GeneCodis, feedback is always appreciated.
